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BIOSUtilities v24.10.18

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Removed all Python built-in library keyword arguments (#55)
This commit is contained in:
Plato Mavropoulos 2024-10-18 13:37:52 +03:00
parent 010b5a47d4
commit 35455f735c
27 changed files with 228 additions and 229 deletions
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34
biosutilities/common/paths.py
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@ -28,7 +28,7 @@ def safe_name(in_name: str) -> str:
name_repr: str = repr(in_name).strip("'")
return re.sub(pattern=r'[\\/:"*?<>|]+', repl='_', string=name_repr)
return re.sub(r'[\\/:"*?<>|]+', '_', name_repr)
def safe_path(base_path: str, user_paths: str | list | tuple) -> str:
@ -65,7 +65,7 @@ def is_safe_path(base_path: str, target_path: str) -> bool:
target_path = real_path(in_path=target_path)
common_path: str = os.path.commonpath(paths=(base_path, target_path))
common_path: str = os.path.commonpath((base_path, target_path))
return base_path == common_path
@ -73,7 +73,7 @@ def is_safe_path(base_path: str, target_path: str) -> bool:
def norm_path(base_path: str, user_path: str) -> str:
""" Create normalized base path + OS separator + user path """
return os.path.normpath(path=base_path + os.sep + user_path)
return os.path.normpath(base_path + os.sep + user_path)
def real_path(in_path: str) -> str:
@ -132,7 +132,7 @@ def delete_dirs(in_path: str) -> None:
""" Delete folder(s), if present """
if is_dir(in_path=in_path):
shutil.rmtree(path=in_path, onerror=clear_readonly_callback) # pylint: disable=deprecated-argument
shutil.rmtree(in_path, onerror=clear_readonly_callback) # pylint: disable=deprecated-argument
def delete_file(in_path: str) -> None:
@ -141,22 +141,22 @@ def delete_file(in_path: str) -> None:
if Path(in_path).is_file():
clear_readonly(in_path=in_path)
os.remove(path=in_path)
os.remove(in_path)
def copy_file(in_path: str, out_path: str, metadata: bool = False) -> None:
""" Copy file to path with or w/o metadata """
if metadata:
shutil.copy2(src=in_path, dst=out_path)
shutil.copy2(in_path, out_path)
else:
shutil.copy(src=in_path, dst=out_path)
shutil.copy(in_path, out_path)
def clear_readonly(in_path: str) -> None:
""" Clear read-only file attribute """
os.chmod(path=in_path, mode=stat.S_IWRITE)
os.chmod(in_path, stat.S_IWRITE)
def clear_readonly_callback(in_func: Callable, in_path: str, _) -> None:
@ -164,7 +164,7 @@ def clear_readonly_callback(in_func: Callable, in_path: str, _) -> None:
clear_readonly(in_path=in_path)
in_func(path=in_path)
in_func(in_path)
def path_files(in_path: str, follow_links: bool = False, root_only: bool = False) -> list[str]:
@ -172,9 +172,9 @@ def path_files(in_path: str, follow_links: bool = False, root_only: bool = False
file_paths: list[str] = []
for root_path, _, file_names in os.walk(top=in_path, followlinks=follow_links):
for root_path, _, file_names in os.walk(in_path, followlinks=follow_links):
for file_name in file_names:
file_path: str = os.path.abspath(path=os.path.join(root_path, file_name))
file_path: str = os.path.abspath(os.path.join(root_path, file_name))
if is_file(in_path=file_path):
file_paths.append(file_path)
@ -194,14 +194,14 @@ def is_dir(in_path: str) -> bool:
def is_file(in_path: str, allow_broken_links: bool = False) -> bool:
""" Check if path is a regural file or symlink (valid or broken) """
in_path_abs: str = os.path.abspath(path=in_path)
in_path_abs: str = os.path.abspath(in_path)
if os.path.lexists(path=in_path_abs):
if os.path.lexists(in_path_abs):
if not is_dir(in_path=in_path_abs):
if allow_broken_links:
return os.path.isfile(path=in_path_abs) or os.path.islink(path=in_path_abs)
return os.path.isfile(in_path_abs) or os.path.islink(in_path_abs)
return os.path.isfile(path=in_path_abs)
return os.path.isfile(in_path_abs)
return False
@ -212,13 +212,13 @@ def is_access(in_path: str, access_mode: int = os.R_OK, follow_links: bool = Fal
if not follow_links and os.access not in os.supports_follow_symlinks:
follow_links = True
return os.access(path=in_path, mode=access_mode, follow_symlinks=follow_links)
return os.access(in_path, access_mode, follow_symlinks=follow_links)
def is_empty_dir(in_path: str, follow_links: bool = False) -> bool:
""" Check if directory is empty (file-wise) """
for _, _, filenames in os.walk(top=in_path, followlinks=follow_links):
for _, _, filenames in os.walk(in_path, followlinks=follow_links):
if filenames:
return False